(To be removed) Visualize and explore alignments
The app will be removed in a future release. Use Genomics Viewer instead.
The NGS Browser app lets you visualize and explore the alignment of reads to a reference sequence.
Visualize short-read data aligned to a nucleotide reference sequence, and compare multiple data sets aligned against a common reference sequence.
View coverage of different regions of the reference sequence.
Investigate quality and other details of aligned reads.
Identify polymorphisms and visualize insertions and deletions.
Retrieve feature annotations relative to a specific region of the reference sequence.
MATLAB® Toolstrip: On the Apps tab, under Computational Biology, click the app icon.
MATLAB command prompt: Enter
Create a BioMap object from a SAM-formatted file.
b = BioMap('ex1.sam');
Display the object in the NGS Browser.
ngsbrowser opens the NGS Browser app.
ngsbrowser( imports a BioMap
biomapObj containing sequence alignment information and
opens it in the app.