Please fix this code
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protein1=input('Please input GenPept code of the first protein: ', 's');
protein2=input('Please input GenPept code of the second protein: ', 's');
disp('Please wait, this can take a while')
for step = 1:50
fprintf('.')
end
seq1 = getgenpept('protein1','SequenceOnly',true);
seq2 = getgenpept('protein2','SequenceOnly',true);
When I input AAA69808 for protein 1, it gives error
3 Comments
Geoff Hayes
on 5 Jan 2015
Ahmad - if the code is returning an error of some kind, then please copy and paste the full error message to your question. Of particular interest is the line number that generated the error.
Answers (2)
Image Analyst
on 5 Jan 2015
Edited: Image Analyst
on 5 Jan 2015
Here's some code you can run to clean things up at the beginning of a script.
clc; % Clear the command window.
close all; % Close all figures (except those of imtool.)
clear; % Erase all existing variables. Or clearvars if you want.
workspace; % Make sure the workspace panel is showing.
Try putting that into a quick launch toolbar button called "Clean up" for easy single-click running of it.
2 Comments
Image Analyst
on 5 Jan 2015
Sorry I can't answer because I don't have the Bioinformatics Toolbox and I don't know what those functions do.
Luuk van Oosten
on 7 Jan 2015
I believe the warning is of no importance to you. Note the difference between different protein annotations, I think that is what is confusing you. It seems that accession numbers are converted to GI nrs.
Have a look here
And here
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