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A simple BLAST algorithm

version 1.3 (9.53 KB) by Ligong Han
A simple BLAST algorithm based on a simple dynamic programming strategy.

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Updated 10 Mar 2015

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The function implements a BLAST (Basic Local Alignment Search Tool) algorithm using a simple dynamic programming strategy. A self-defined vTree class is also included, on which the "Reconstruct" process is based. The data of the tree is stored in a vector. The idea is inspired by the union-find algorithm.

Cite As

Ligong Han (2020). A simple BLAST algorithm (https://www.mathworks.com/matlabcentral/fileexchange/49003-a-simple-blast-algorithm), MATLAB Central File Exchange. Retrieved .

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Updates

1.3

- vTree class updated: fixed an error of the 'delChild' method

1.2.0.0

- Updated vTree

1.1.0.0

- a missing file added
- method of vTree class added

MATLAB Release Compatibility
Created with R2014a
Compatible with any release
Platform Compatibility
Windows macOS Linux