Yes. When you call the figure() command, call it with an input argument:
Then, before you do the particular plotting command, call figure() again, using the input argument that you want to plot to:
>> figure(1)
>> plot(1:10)
>> figure(2)
>> plot(2:11)
When the figure number already exists, it makes that figure current.
You might want to read "doc figure", "doc gcf", and "doc hold" to make sure you don't overwrite the plot that is already there in that figure.
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