How do I compile a GUI that begins with a MainGUI then moves to several Proxy GUIs?

Hi

I'm trying to use the Matlab compiler to create a stand-alone app from several GUIs. So far, the structure of my GUI project is as follows:

MainGui>>ProxyGUI1-3>>ProxyGUI3-6

How do I arrange this in the compiler? Do i use the MainGui.m as the main file, then all the ProxyGui.fig as the additional files?