GO = geneont('live', 'false'); stopped working

Hi I was using genont for a while and everything worked fine, but suddenly it stopped working

the line of code I am using is :

GO = geneont('live', 'false');

and it should return a geneont object.

This is the error I get

Error using == Matrix dimensions must agree.

Error in geneont (line 160) fromID2 = sscanf(char(regexp(obo(relaTypes==pof),'GO:\d+','match','once'))','GO:%d')+1;

[Geoff Hayes]

Lilach - what happens if you try

 geneont('LIVE', true)

instead to create a geneont object, from the most recent version of the Gene Ontology database?

The error is indicating that there is a problem in the line of code that is comparing the relaTypes and pof - both must have the same dimension (for example, they both must be mxn matrices).

[Thomas De Luca]

As of right now, I am receiving the same error when using

geneont('LIVE',true)

The error also occurs if I download gene_ontology.obo and use

geneont('file','gene_ontology.obo')

UPDATE:

I was able to resolve the problem by downloading a previous revision (4.1809) of gene_ontology.obo. This will be a suitable workaround for me until the problem is resolved.

[Lilach]

Thanks!

Now it is resolved indeed.

Lilach

Answer 1

[Arthur Goldsipe]

It looks like this problem was also fixed in the latest update to the Gene Ontology database. It sounds like maybe there was a problem in a particular version of the database.

[Lilach]

Thank you for that, I figured this was the case but was unable to find the location of the older obo files in the site.

Where did you find it ?