Synapse-Detection

Frameworks for live cell imaging and stainings based on automatic detection of synapsis in a watershed based algorithm

https://doi.org/10.3389/fbinf.2022.814081

for SynEval:

Camerasettings, max/min size of expected puncta in µm, binning, magnifications --> calculation of expected size range in pixels

number of iterations

for ImgSegRout:

Camerasettings, max/min size of expected puncta in µm, binning, magnifications --> calculation of expected size range in pixels

number of iterations

discard bright regions yes/no

denoise during preprocessing yes/no

we will always keep on updating repository with the most recent versions

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