Neuron counting

Count the number of fluorescent cells (tagged with GFP) on noisy background fluorescence


Updated Fri, 05 Mar 2010 16:31:54 +0000

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% Matlab GUI for neuron counting
% frequency filtering to remove background fluorescence
% Otsu's method for thresholding, with user interaction
% Original image courtesy of Lan Guo

Cite As

EMC_solver (2023). Neuron counting (, MATLAB Central File Exchange. Retrieved .

MATLAB Release Compatibility
Created with R2008b
Compatible with any release
Platform Compatibility
Windows macOS Linux

Inspired by: Image overlay

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Version Published Release Notes

new GUI interface, tophat for preprocessing, optional outlining colors

include colormap for color image display

GUI version was made