Microscopy Image Browser (MIB)
- 2 files
- 30 downloads
PLEASE NOTE!
This is an older version tree of MIB, the newer version for Matlab R2014b and newer available from here
http://se.mathworks.com/matlabcentral/fileexchange/63402-microscopy-image-browser-2--mib2-
With MIB you can analyse, segment and visualize various multidimensional datasets from both light and electron microscopy.
See more further details and tutorials on MIB website: http://mib.helsinki.fi/index.html
I would like to acknowledge Matlab File Exchange user community and especially the authors whose functions were utilized during development of the program:
http://mib.helsinki.fi/acknowledgements.html
Cite As
Ilya Belevich (2020). Microscopy Image Browser (MIB) (https://github.com/Ajaxels/MIB), GitHub. Retrieved .
Comments and Ratings (2)
Updates
| 1.302.0.0 | Added reference to MIB2, which is recommended to use instead of MIB for Matlab R2014b and later |
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| 1.302.0.0 | 1.302 Improved and simplified the segmentation panel |
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| 1.23.0.0 | new image alignment; IMOD enhanced compatibility, improvements and bug fixes |
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| 1.23.0.0 | new image alignment; IMOD enhanced compatibility, improvements and bug fixes |
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| 1.2.0.0 | Version 1.20 20.06.2016 (volume rendering/new installer) |
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| 1.1.0.0 | updated description |
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Acknowledgements
Inspired by: view3d.m, Local Normalization, extrema.m, extrema2.m, IMAGEVIEWER, findjobj - find java handles of Matlab graphic objects, 3D Euclidean Distance Transform for Variable Data Aspect Ratio, Region Adjacency Graph (RAG), stlwrite - write ASCII or Binary STL files, maxflow, Viewer3D, export_fig, Hessian based Frangi Vesselness filter, Accurate Fast Marching, Fast/Robust Template Matching, imgaussian, Image Edge Enhancing Coherence Filter Toolbox, Highly portable JSON-input parser, Jann5s/measuretool, Render RGB text over RGB or Grayscale Image, improved xlswrite.m, xml2struct, struct2xml, IMCLIPBOARD, Hardware accelerated 3D viewer for MATLAB, mdrohmann/mtocpp, NRRD Format File Reader, drifty_shifty_deluxe.m, regionprops3
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Classes/@Labels
Classes/@Measure
Classes/@imageData
Classes/@imageUndo
Classes/@roiRegion
GuiTools
GuiTools/volren
ImageFilters
ImageFilters/Coherence_filter
ImageFilters/Coherence_filter/functions
ImageFilters/Coherence_filter/functions2D
ImageFilters/Coherence_filter/functions3D
ImageFilters/Coherence_filter/optimization
ImageFilters/FastMarching
ImageFilters/FastMarching/functions
ImageFilters/FastMarching/shortestpath
ImageFilters/Frangi
ImageFilters/RandomForest
ImageFilters/RandomForest/MembraneDetection
ImageFilters/RandomForest/RF_Class_C
ImageFilters/RandomForest/RF_Reg_C
ImageFilters/Supervoxels
ImportExportTools
ImportExportTools/BioFormats
ImportExportTools/BioFormats/private
ImportExportTools/Fiji
ImportExportTools/HDF5
ImportExportTools/Imaris
ImportExportTools/Imaris/@IceImarisConnector
ImportExportTools/MatTomo/@ImodChunk
ImportExportTools/MatTomo/@ImodChunk/private
ImportExportTools/MatTomo/@ImodContour
ImportExportTools/MatTomo/@ImodContour/private
ImportExportTools/MatTomo/@ImodMesh
ImportExportTools/MatTomo/@ImodMesh/private
ImportExportTools/MatTomo/@ImodModel
ImportExportTools/MatTomo/@ImodModel/private
ImportExportTools/MatTomo/@ImodObject
ImportExportTools/MatTomo/@ImodObject/private
ImportExportTools/MatTomo/@MRCImage
ImportExportTools/MatTomo/@MRCImage/private
ImportExportTools/MatTomo/Utils
ImportExportTools/MatTomo/Visualization
ImportExportTools/Omero
ImportExportTools/export_fig
ImportExportTools/nrrd
Misc_func
Misc_func/imclipboard
Plugins/Demos/generateStereologyGrid
Plugins/Demos/ib_tubesVsSheets
Plugins/IntensityAnalysis/NucleusVsCytoplasm
Plugins/IntensityAnalysis/TripleAreaIntensity
Plugins/Tutorials/guiTutorial
Plugins/Tutorials/otsuThresholding
Tools
Tools/Align
Tools/AreaAnalysis
Tools/RegionGrowing
techdoc
Plugins/Demos/ib_tubesVsSheets
Plugins/IntensityAnalysis/NucleusVsCytoplasm
Plugins/IntensityAnalysis/TripleAreaIntensity
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Ilya Belevich (view profile)
Thank you John for kind words! I hope you are using the second version of MIB (its way better :] ): http://se.mathworks.com/matlabcentral/fileexchange/63402-microscopy-image-browser-2--mib2-
John Miers (view profile)
The easy to use gui and large array of tools for selection and alteration are great.