pafread

Reads a .paf file generated from an alignment tool like Minimap2 into a SAM-like struct

Version 1.0.2 (1.66 KB)
9 Downloads
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21 Aug 2019

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Reads a .paf file generated from an alignment
User will need to change the texscan format file and downstream tags to suit their needs tool like Minimap2 into a SAM-like struct. Unlikely to be supported if any dependent functions are changed in future MATLAB versions

Cite As

gchao (2026). pafread (https://in.mathworks.com/matlabcentral/fileexchange/72472-pafread), MATLAB Central File Exchange. Retrieved .

Categories

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General Information

MATLAB Release Compatibility

  • Compatible with any release

Platform Compatibility

  • Windows
  • macOS
  • Linux
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Version Published Release Notes
1.0.2

Also accepts cells as input.
1.0.1

Allows for direct string input as well
1.0.0