76 results

SimBiology implementation of a generic PBPK model. Human fasted, Human fed and Rat physiologies.

This is a simulation of Hodgkin-Huxley equations using simulink blocks.

Computations of joint angles and displacements, intersegmental moments and forces (lower / upper limb)

Flow Cytometry Data Reader and Visualization Example

Provides a PBPK and a Renin-Angiotensin system model for SimBiology

Clarke EGA quantifies the accuracy of glucose estimates generated by meters as compared to reference

This is a cross-platform version of mimimum-redundancy maximum-relevancy feature selection

SimBiology implementation of the Target-Mediated Drug Disposition (TMDD) model

Imports ODE models in the BerkeleyMadonna(TM) format into a SimBiology(R) model

Function for doing Parkes Error Grid Analysis on blood glucose samples

SimBiology project containing a simple CSTR bioreactor model

writeFCS creates FCS file specified by Data File Standard for Flow Cytometry

Read/write functions for Telemac hydrodynamic model files (both Selafin and Leonard formats)

a template PBPK IgG model that can serve as a platform for developing PBPK model for antibodies in tumor bearing mouse

a tool to estimate the Michaelis-Menten kinetic parameters

Use SimBiology for dynamic modeling and COBRA Toolbox algorithms for constraint-based modeling.

A guide of data processing in NIR application for modeling

A graphical user interface to the Flex02-01D hardware correlator accessing the Windows driver.

A blood glucose model of type-1 diabetics.

Utility to generate ODEs from and xml file generated by sbiodesktop

A MATLAB implementation of Monte Carlo simulation for photon migration inside tissue.

SimBiology model for PK/PD of antibacterial drugs

A set of Matlab functions which are designed to help clinicians and researchers use GEANT4 or TOPAS

SimBiology model describing the effect of anticancer drugs on tumor growth kinetics

Interactive smoothing, differentiation, power spectra, and measurement of time-series signals.

SimBiology model and code to perform CI and NCA analyses, and optimization using parallel computing.

Functions to import SBML files containing function definitions into SimBiology.

Pearl's message passing algorithm implementation and application to lung cancer diagnosis

simulink realization of Morris-Lecar neuron model

Instructions and m-files for setting up a remote-controlled multielectrode dish perfusion system.

A modified version of EMBLRead for Reading a EMBL file into a Matlab structure much faster

Computes Michaelis-Menten model parameters

A MATLAB implementation of Monte Carlo simulation for photon migration inside tissue.

A MATLAB package for metabolical modeling, analysis and optimization.

The test calculate the performance of a clinical test based on the Bayes theorem

PKPD model for ACE inhibition with benazapril or cilazapril

Converts an image of an R&D Systems Proteome Profiler Array into a list of relative protein levels.

Estimate LDL cholesterol based on measured total cholesterol (TC), HDL, and triglycerides (TG).

Test if a locus is under Hardy Weinberg Proportion

Set the Efficiency of a RT-PCR to use in the relative quantification of transcripts.

Classes for fundamental PKPD modeling in drug discovery (no support for a NLME modeling).

SimBiology model used in the webinar: Modeling Synthetic Biology Systems with MATLAB and SimBiology

An example deployable MATLAB^® app for simulating a mechanistic PK/PD model built using SimBiology^®.

Provides a SimBiology model implementation of the Renin-Angiotensin-System

SimBiology model describing the metabolism and distribution of TCE using a human PBPK model

Examples used in the March 2012 webinar: Using SimBiology for Mechanism-Based PK/PD Modeling

SimBiology model used in webinar: Modeling Biology with SimBiology: An Introduction for iGEM Teams

Annotate BLAST reports with taxonomic information

Simple script to recover and plot Neurolucida files and outputs from "Michi Tracer".

Automatic white blood cells detector

Data analysis code and example datasets for ratiometric FRET analysis

Control blood sugar levels by adjusting insulin injection pump rate

MATLAB based matched filter is implemented for an iNIRF imaging method

This file contains one of the models the KU Leuven-team used for the iGEM 2013 World Jamboree

MATLAB routines for the book: "Development of Innovative Drugs via Modeling with MATLAB".

Tool to automate the process of creating standalone, model-exploration apps for SimBiology model

Toolkit to generate pulsatile flow profile, characteristics and dicom images using Navier-Stokes eqs

The process of mean-centering is to calculate the average spectrum of the data set and subtract that

Fit disruption replenishment time-intensity data with the lognormal perfusion model

It is a simple decay calculator with most of the nuclear medicine isotopes.