phytreeviewer

Visualize, edit, and explore phylogenetic tree data

Syntax

phytreeviewer

phytreeviewer(Tree)

phytreeviewer(File)

Description

phytreeviewer opens the Phylogenetic Tree app that allows you to view, edit, and explore phylogenetic tree data.

phytreeviewer(Tree) loads a phytree object Tree into the app.

phytreeviewer(File) loads data from a Newick or ClustalW tree formatted file into the app.

Input Arguments

Tree — Phylogenetic tree

Phytree object

Phylogenetic tree, specified as a Phytree object created with the functions phytree or phytreeread.

File — Newick or ClustalW tree formatted file

character vector | string

Newick or ClustalW tree formatted file, specified as a character vector or string containing the file name, a path and file name, or a URL pointing to the file.

Examples

View a Phylogenetic Tree

This example shows how to view a phylogenetic tree.

Load a sample phylogenetic tree.

tr= phytreeread('pf00002.tree')

    Phylogenetic tree object with 33 leaves (32 branches)

View the phylogenetic tree.

phytreeviewer(tr)

Alternatively, you can click Phylogenetic Tree on the Apps tab to open the app, and view the phylogenetic tree object tr .