Creating a 3-D bar graph with parameter sensitivities with respect to all model species
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Fearass Zieneddin on 14 Mar 2022
I would like to create a 3D bar graph that displays parameter sensitivities for different species in a simbiology model. I tried exporting the simbiology task code to MATLAB but I cannot run the script even after specifying the correct model file. I would like to do this with MATLAB code to create high quality publication figures for the sensitivity analysis. I cannot see any data generated using my code below:
%set(v(1), 'Active'); %set variant that contains top 5 param.
cs = getconfigset(m4, 'active');
set(cs, 'StopTime', 56);
%mathworks command line
%[t,r,outputFactors,inputFactors] = getsensmatrix(simdata,outputFactorNames,inputFactorNames);
outputNames= ["A", "B", "C", "D", "E", "F", "G", "H", "I"];
inoutNames= ["k1", "k2", "k3", "k4", "k5", "k6", "k7"];
simdata= sbiosimulate (m4,,varObj(3), doseObj(2));
[t,r,outputFactors,inputFactors] = getsensmatrix(simdata,outputNames,inputNames);
Also attached is a figure that I would like to get using my code.
Thanks in advance!
Arthur Goldsipe on 14 Mar 2022
I'm guessing the configset is not configured for sensitivity analysis. You probably need to do something like the following before calling sbiosimulate:
cs.SolverOptions.SensitivityAnalysis = true;
sensOpts = cs.SensitivityAnalysisOptions;
sensOpts.Outputs = sbioselect(m1, "Name", outputNames);
sensOpts.Inputs = sbioselect(m1, "Name", inputNames);