FSL compatibility with Windows 10

I am currently trying to run FSL commands with the Matlab command lines. Yet whenever I attempt to do this, the system cannot find any of my commands like system('flirt') as it says that it is inoperable. Can someone tell me how to set up a script that can run FSL into Matlab?

Answers (1)

Nitish Katoch
Nitish Katoch on 7 Apr 2021
Hello,
If you are still looking for the answer. Please try running this.
system(['bash -c "/usr/local/fsl/bin/flirt -h" ']).

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Asked:

on 28 May 2020

Answered:

on 7 Apr 2021

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