Plot Data to find the decision boundary for logisitc regression.
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I am using the Wisconsin Breast Cancer Diagnostic Data Set found on the UCI Machine Learning website. I am trying to implement logistic regression to classify the tumour as either malignant or benign, I changed the class to 0 for benign and 1 for malignant, for two features only, Marginal Adhesion and Clump Thickness. This is for an assignment at uni and we did not study much beyond logistic regression. I am aware there are other classification techniques out there but that is beyond the scope of my skills. I am trying to plot Maginal Adhesion against Clump Thickness however my graph ends up looking like the one above. I have used the following code that I found online.
This is the code to plot the data in a graph.
figure; hold on
pos = find(y==1); %Malignant
neg = find(y==0); %Benign
plot(X(pos,1), X(pos, 2), 'k+','LineWidth',5,'MarkerSize',5);
plot(X(neg,1), X(neg,2), 'ko','MarkerFaceColor','b','MarkerSize',5);
Edit: I have included the code I used to plot the Decision Boundary, sorry I should have included that before too.
function plotDecisionBoundary(theta, X, y)
if size(X, 2) <= 3
%Only need 2 points to define a line, so choose two endpoints
plot_x = [min(X(:,2))-4, max(X(:,2))+4];
%Calculate the decision boundary line
plot_y = (-1./theta(3)).*(theta(2).*plot_x + theta(1));
%Plot and adjust axes for better viewing
legend('Benign','Malignant', 'Decision Boundary')
axis([1,10, 1, 10])
%Here is the grid range
u = linspace(-1, 1.5, 50);
v = linspace(-1, 1.5, 50);
z = zeros(length(u), length(v));
%Evaluate z = theta*x over the grid
for i = 1:length(u)
for j = 1:length(v)
z(i,j) = mapfeature(u(i), v(j))*theta;
z = z'; %important to transpose z before contour
%Plot z = 0
%Notice you need to specify the range [0,0]
countour(u, v, z, [0, 0], 'LineWidth', 2)
To be honest, I am not too sure whether the code is right or not as I am still quite new to Matlab and am trying to get it working from watching videos online.
I want my graph to look like the following below; can anyone let me know what I am doing wrong?
Any help is appreciated. Thank you in advance.