Preprocessing
Preprocess raw or centroided signal data for analysis.
Functions
msresample | Resample signal with peaks |
msbackadj | Correct baseline of signal with peaks |
msnorm | Normalize set of signals with peaks |
mslowess | Smooth signal with peaks using nonparametric method |
mssgolay | Smooth signal with peaks using least-squares polynomial |
msppresample | Resample signal with peaks while preserving peaks |
msheatmap | Create pseudocolor image of set of mass spectra |
msdotplot | Plot set of peak lists from LC/MS or GC/MS data set |
msviewer | Explore mass spectrum or set of mass spectra |
Featured Examples
Visualizing and Preprocessing Hyphenated Mass Spectrometry Data Sets for Metabolite and Protein/Peptide Profiling
Manipulate, preprocess and visualize data from Liquid Chromatography coupled with Mass Spectrometry (LC/MS). These large and high dimensional data sets are extensively utilized in proteomics and metabolomics research. Visualizing complex peptide or metabolite mixtures provides an intuitive method to evaluate the sample quality. In addition, methodical correction and preprocessing can lead to automated high throughput analysis of samples allowing accurate identification of significant metabolites and specific peptide features in a biological sample.
Batch Processing of Spectra Using Sequential and Parallel Computing
Use a single computer, a multicore computer, or a cluster of computers to preprocess a large set of mass spectrometry signals. Note: Parallel Computing Toolbox™ and MATLAB® Parallel Server™ are required for the last part of this example.
